PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G28510.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1171aa    MW: 129567 Da    PI: 6.7643
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G28510.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.61e-22154255199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++
  ORUFI06G28510.2 154 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RD 243
                      99*****************************954.4444.49************************************************..56 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++++l+++++r+
  ORUFI06G28510.2 244 EKQQLLLGIRRA 255
                      88889****997 PP

2Auxin_resp117.98.1e-39280363183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  ORUFI06G28510.2 280 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 363
                      79**********************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.4E-43143283IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-41146269IPR015300DNA-binding pseudobarrel domain
CDDcd100174.74E-19153245No hitNo description
SMARTSM010191.6E-22154256IPR003340B3 DNA binding domain
PROSITE profilePS5086311.801154256IPR003340B3 DNA binding domain
PfamPF023621.2E-20154255IPR003340B3 DNA binding domain
PfamPF065071.6E-33280363IPR010525Auxin response factor
PfamPF023091.8E-910251112IPR033389AUX/IAA domain
PROSITE profilePS5174526.93810271111IPR000270PB1 domain
SuperFamilySSF542774.61E-710391106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1171 aa     Download sequence    Send to blast
MMKQAQQQPP PPPASSAATT TTAMAAAAAA AVVGSGCEGE KTKAPAINSE LWHACAGPLV  60
SLPPAGSLVV YFPQGHSEQV AASMQKDVDA HVPSYPNLPS KLICLLHNVT LHADPETDEV  120
YAQMTLQPVT SYGKEALQLS ELALKQARPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF  180
PPLDFSMQPP AQELQARDLH DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVIF  240
VRDEKQQLLL GIRRANRQPT NISSSVLSSD SMHIGILAAA AHAAANNSPF TIFYNPRASP  300
TEFVIPFAKY QKAVYGNQIS LGMRFRMMFE TEELGTRRYM GTITGISDLD PVRWKNSQWR  360
NLQVGWDESA AGERRNRVSI WEIEPVAAPF FICPPPFFGA KRPRQLDDES SEMENLLKRA  420
MPWLGEEICI KDPQTQNTIM PGLSLVQWMN MNMQQSSSFA NTAMQSEYLR SLSNPNMQNL  480
GAADLSRQLC LQNQLLQQNN IQFNTPKLSQ QMQPVNELAK AGIPLNQLGV STKPQEQIHD  540
ASNLQRQQPS MNHMLPLSQA QTNLGQAQVL VQNQMQQQHA SSTQGQQPAT SQPLLLPQQQ  600
QQQQQQQQQQ QQQQQQQKLL QQQQQQLLLQ QQQQLSKMPA QLSSLANQQF QLTDQQLQLQ  660
LLQKLQQQQQ SLLSQPAVTL AQLPLIQEQQ KLLLDMQQQL SNSQTLSQQQ MMPQQSTKVP  720
SQNTPLPLPV QQEPQQKLLQ KQAMLADTSE AAVPPTTSVN VISTTGSPLM TTGATHSVLT  780
EEIPSCSTSP STANGNHLLQ PILGRNKHCS MINTEKVPQS AAPMSVPSSL EAVTATPRMM  840
KDSPKLNHNV KQSVVASKLA NAGTGSQNYV NNPPPTDYLE TASSATSVWL SQNDGLLHQN  900
FPMSNFNQPQ MFKDAPPDAE IHAANTSNNA LFGINGDGPL GFPIGLGTDD FLSNGIDAAK  960
YENHISTEID NSYRIPKDAQ QEISSSMVSQ SFGASDMAFN SIDSTINDGG FLNRSSWPPA  1020
APLKRMRTFT KVYKRGAVGR SIDMSQFSGY DELKHALARM FSIEGQLEER QRIGWKLVYK  1080
DHEDDILLLG DDPWEEFVGC VKCIRILSPQ EVQQMSLEGC DLGNNIPPNQ ACSSSDGGNA  1140
WRARCDQNSE AILKISMMKS KVEDVRYWNT A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1714238446388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712960.0AB071296.1 Oryza sativa OsARF7a mRNA for auxin response factor 7a, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643493.10.0PREDICTED: auxin response factor 19
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLA0A0E0Q2A50.0A0A0E0Q2A5_ORYRU; Auxin response factor
STRINGORGLA06G0221800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19